PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2513_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 313aa    MW: 34865.5 Da    PI: 6.2446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2513_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.19.9e-1685136155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r +h ++Er+RR+++N+ ++ Lr+l+P++    s+K + a+i+  A+++Ik+L+
  RrC2513_p1  85 QRITHIAVERNRRRQMNQHLSVLRSLMPQP---FSQKGDQASIVGGAIDFIKELE 136
                 799***************************...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.58E-1283133No hitNo description
Gene3DG3DSA:4.10.280.102.8E-1383138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1683148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77784135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-1385136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1190141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTLEALSSNG LLNFLLSESL SPTPFKSLLD LEPSPENDII IAKNTIPEMS PQEPASRQPP  60
PASRGKKRRR RKPRVCKNEE EAENQRITHI AVERNRRRQM NQHLSVLRSL MPQPFSQKGD  120
QASIVGGAID FIKELEHELL SLEAQKLQKD KLNQTVTSST SQDSNCEPEN PHPSLSQFFL  180
HSYDPSQENR NGSTSSVKTA MEDLEVTLIE THANIRILSR RRGFQWTSVV ATTGPPQLSK  240
LVAALQSLSL SVLHLSVTTL ETFAIYSIST KVEESCQLSS VDDIAGAVHH MLSIIEEEPF  300
CCSTMPELPF TSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571KKRRRRK
26572KKRRRRKP
36671KRRRRK
46773RRRRKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535550.0AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101500.10.0PREDICTED: transcription factor bHLH71-like
RefseqXP_013693104.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ56XR01e-169BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A078JEC00.0A0A078JEC0_BRANA; BnaA06g40430D protein
STRINGBra025007.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-143beta HLH protein 71